top of page
Publications
Spatial epigenome–transcriptome co-profiling of mammalian tissues. (Nature), 2023
Zhang D., Deng Y., Kukanja P., Agirre E., Bartosovic M., Dong M., Ma C., Ma S., Su G., Bao S., Liu Y., Xiao Y., Rosoklija G. B., Dwork A. J., Mann J. J., Leong K. W., Boldrini M., Wang L., Haeussler M., Raphael B. J., Kluger Y., Castelo-Branco G. & Fan R.
Liu Y., DiStasio M., Su G., Asashima H., Enninful A., Qin X., Deng Y., Nam J., Gao F., Bordignon P., Cassano M., Tomayko M., Xu M., Halene S., Craft J. E., Hafler D. & Fan R.
Spatial-ATAC-seq: spatially resolved chromatin accessibility profiling of tissues at genome scale and cellular level. (Nature), 2022
Deng Y., Bartosovic M., Ma S., Zhang D., Kukanja P., Xiao Y., Su G., Liu Y., Qin X., Rosoklija G. B., Dwork A. J., Mann J. J., Xu M. L., Halene S., Craft J. E., Leong K. W., Boldrini M., Castelo-Branco G. & Fan R.
Spatial-CUT&Tag: Spatially resolved chromatin modification profiling at the cellular level. (Science), 2022
Deng Y., Bartosovic M., Kukanja P., Zhang D., Liu Y., Su G., Enninful A., Bai Z., Castelo-Branco G. & Fan R.
Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells. (Neuron), 2021
Franjic D., Skarica M., Ma S., Arellano J. I., Tebbenkamp A. T.N., Choi J., Xu C., Li Q., Morozov Y. M., Andrijevic D., Vrselja Z., Spajic A., Santpere G., Li M., Zhang S., Liu Y., Spurrier J., Zhang L., Gudelj I., Rapan L., and Sestan N.
Liu Y., Yang M., Deng Y., Su G., Enninful A., Guo C. C., Tebaldi T., Zhang D., Kim D., Bai Z., Norris E., Pan A., Li J., Xiao Y., Halene S., & Fan R.
Liu Y., Enninful A., Deng Y., & Fan R.
Su G., Qin X., Enninful A., Bai Z., Deng Y., Liu Y., & Fan R.
Prediction of protein corona on nanomaterials by machine learning using novel descriptors. (NanoImpact), 2020
Duan Y., Coreas R., Liu Y., Bitounis D., Zhang Z., Parviz D., Strano M., Demokritou P., & Zhong W.
A supramolecular sensor array for selective immunoglobulin deficiency analysis. (Chemical Communications), 2019
Liu Y., Gill A. D., Duan Y., Perez L., Hooley R. J., & Zhong W.
Rapid Enrichment and Detection of Extracellular Vesicles Enabled by CuS- Enclosed Microgels. (Analytical Chemistry), 2019
Jiang Q., Liu Y., Wang L., Adkins GB., Zhong W.
Selective Array-Based Sensing of Anabolic Steroids in Aqueous Solution by Host-Guest Reporter Complexes. (Chemistry – A Europe Journal), 2019
Gill A. D., Perez L., Salinas I. N.Q., Byers S. R., Liu Y., Hickey B. L., Zhong W., & Hooley R. J.
Recent Advances in Design of Fluorescence-Based Assays for High- Throughput Screening. (Analytical Chemistry), 2018
Fang X., Zheng Y., Duan Y., Liu Y, Zhong W.
Mapping Molecular Structure of Protein Locating on Nanoparticles with Limited Proteolysis. (Analytical Chemistry), 2018
Duan Y, Liu Y, Coreas R, Zhong W.
A Single Extracellular Vesicle (EV) Flow Cytometry Approach to Reveal EV Heterogeneity. (Angewandte Chemie International Edition), 2018
Shen W, Guo K, Adkins GB, Jiang Q, Liu Y, Sedano S, Duan Y, Yan W, Wang SE, Bergersen K, Worth D, Wilson EH, Zhong W.
Encapsulation of ionic nanoparticles produces reactive oxygen species (ROS)-responsive microgel useful for molecular detection. (Chemical Communications), 2018
Liu Y, Wang YM, Sedano S, Jiang Q, Duan Y, Shen W, Jiang JH, Zhong W.
Selective Sensing of Phosphorylated Peptides and Monitoring Kinase and Phosphatase Activity with a Supramolecular Tandem Assay. (Journal of American Chemical Society), 2018
Liu Y, Lee J, Perez L, Gill AD, Hooley RJ, Zhong W.
Metal-assisted selective recognition of biothiols by a synthetic receptor array. (Chemical Communications)
Liu Y, Duan Y, Gill AD, Perez L, Jiang Q, Hooley RJ, Zhong W.
Separation of Methylated Histone Peptides via Host-Assisted Capillary Electrophoresis. (Analytical Chemistry)
Lee J, Perez L, Liu Y, Wang H, Hooley RJ, Zhong W.
Highly Efficient Exosome Isolation and Protein Analysis by an Integrated Nanomaterial-Based Platform. (Analytical Chemistry)
Fang X, Duan Y, Adkins GB, Pan S, Wang H, Liu Y, Zhong W.
Site selective reading of epigenetic markers by a dual-mode synthetic receptor array. (Chemical Science)
Liu Y, Perez L, Mettry M, Gill AD, Byers SR, Easley CJ, Bardeen CJ, Zhong W, Hooley RJ.
Selective Heavy Element Sensing with a Simple Host-Guest Fluorescent Array. (Analytical Chemistry)
Liu Y, Mettry M, Gill AD, Perez L, Zhong W, Hooley RJ.
Rapid Enrichment and Sensitive Detection of Multiple Metal Ions Enabled by Macroporous Graphene Foam. (Analytical Chemistry)
Fang X, Liu Y, Jimenez L, Duan Y, Adkins GB, Qiao L, Liu B, Zhong W.
Fluorescamine Labeling for Assessment of Protein Conformational Change and Binding Affinity in Protein-Nanoparticle Interaction. (Analytical Chemistry)
Duan Y, Liu Y, Shen W, Zhong W.
Self-Aggregating Deep Cavitand Acts as a Fluorescence Displacement Sensor for Lysine Methylation. (Journal of American Chemical Society)
Liu Y, Perez L, Mettry M, Easley CJ, Hooley RJ, Zhong W.
A mitochondrion targeting fluorescent probe for imaging of intracellular superoxide radicals. (Chemical Communications)
Si F, Liu Y, Yan K, Zhong W.
Mechanistic Study on the Reduction of SWCNT‐induced Cytotoxicity by Albumin Coating. Particle & Particle Systems Characterization.
Liu Y, Ren L, D Yan, Zhong W.
Development of microplate-based photoelectrochemical DNA biosensor array for high throughput detection of DNA damage. (Sensors and Actuators B: Chemical)
Liu Y, Jia S, Guo L.
Reductive dechlorination of hexachlorobenzene by Cu/Fe bimetal in the presence of nonionic surfactant. (Journal of Hazardous Materials)
Zheng Z, Yuan S, Liu Y, Lu X, Wan J, Wu X, Chen J.
bottom of page